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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
31
total RNA-seq
25
ChIP-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA accessibility
32
Transcription
25
DNA binding
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
667
February, 2021
397
November, 2017
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
59
bed narrowPeak
54
bam
54
fastq
46
bigWig
21
bigBed narrowPeak
7
txt
5
tsv
1
bed bed3+
Organism
96
Homo sapiens
Biosample type
primary cell
73
tissue
23
cell line
Organ
45
liver
24
pancreas
18
blood
18
bodily fluid
7
spleen
2
musculature of body
Project
96
AMP
Genome assembly (visualization)
65
hg19
26
GRCh38
Lab
40
Karen Mohlke, UNC
32
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
biosample_type!
primary cell
month_released!
August, 2017
May, 2019
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
cell line
GM12878
18
HepG2
5
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