Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
total RNA-seq
164
ChIP-seq
21
ATAC-seq
9
DNase-seq
7
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
270
Transcription
164
DNA binding
31
DNA accessibility
7
DNA methylation
Target of assay
80
transcription factor
49
histone
49
histone modification
39
narrow histone mark
35
control
26
RNA binding protein
16
recombinant protein
10
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
408
bam
382
bigWig
265
tsv
106
bed narrowPeak
87
fastq
73
bigBed narrowPeak
56
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
474
Homo sapiens
Biosample type
primary cell
259
tissue
132
in vitro differentiated cells
83
cell line
Organ
247
liver
68
pancreas
26
epithelium
15
blood
15
bodily fluid
9
spleen
3
heart
2
brain
2
connective tissue
2
embryo
1
adipose tissue
1
thymus
Project
472
AMP
2
T1D
Genome assembly (visualization)
373
hg19
368
GRCh38
Lab
425
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
474 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
FAIRE-seq
tissue
liver
143
54
2
islet of Langerhans
36
spleen
6
1
2
body of pancreas
2
2
pancreas
1
2
1
+ See 6 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
HepG2
45
1
1
EndoC_BH1
4
1
16
GM12878
15
See all biosamples
Download