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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
38
ChIP-seq
21
ATAC-seq
1
pCHi-C
Assay category
127
Transcription
38
DNA binding
21
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
control
5
RNA binding protein
Date released
664
February, 2021
329
November, 2017
315
August, 2017
304
August, 2021
244
October, 2019
187
May, 2021
171
May, 2020
163
June, 2019
120
July, 2018
117
February, 2023
93
May, 2019
81
November, 2018
77
July, 2019
73
December, 2017
April, 2019
66
May, 2022
63
March, 2020
59
November, 2019
47
September, 2023
45
October, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
5
December, 2019
5
March, 2019
5
November, 2020
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
132
bigWig
127
bam
121
tsv
6
bed narrowPeak
5
tagAlign
Organism
187
Homo sapiens
Biosample type
primary cell
126
in vitro differentiated cells
40
tissue
21
cell line
Organ
60
pancreas
25
epithelium
3
heart
2
embryo
1
connective tissue
1
thymus
Project
185
AMP
2
T1D
Genome assembly (visualization)
132
hg19
127
GRCh38
Lab
143
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
biosample_type!
primary cell
month_released!
April, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
32
5
induced pluripotent stem cell
9
pancreatic PP cell
2
cardiac fibroblast
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
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