Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 127total RNA-seq
  • 44ChIP-seq
  • 21ATAC-seq
  • 1pCHi-C
Assay category
  • 127Transcription
  • 44DNA binding
  • 21DNA accessibility
Target of assay
  • 22histone
  • 22histone modification
  • 16transcription factor
  • 12narrow histone mark
  • 10broad histone mark
  • 6control
  • 5RNA binding protein
Date released
  • 667February, 2021
  • 397November, 2017
  • 352August, 2017
  • 315August, 2021
  • 280October, 2019
  • 194May, 2020
  • 193May, 2021
  • 163June, 2019
  • 120July, 2018
  • 117February, 2023
  • 115May, 2019
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 77July, 2019
  • 74October, 2018
  • 66May, 2022
  • 63March, 2020
  • 61November, 2019
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 15May, 2023
  • 10November, 2020
  • 8January, 2018
  • 8January, 2021
  • 6April, 2018
  • 6September, 2017
  • 5December, 2019
  • 5March, 2019
  • 4March, 2023
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 132bigWig
  • 128bam
  • 121tsv
  • 6bed narrowPeak
  • 6tagAlign
Organism
  • 193Homo sapiens
Biosample type
  • primary cell
  • 132in vitro differentiated cells
  • 40tissue
  • 21cell line
Organ
  • 61pancreas
  • 26epithelium
  • 3heart
  • 2embryo
  • 1connective tissue
  • 1thymus
Project
  • 191AMP
  • 2T1D
Genome assembly (visualization)
  • 132hg19
  • 127GRCh38
Lab
  • 144AMP-T2D consortium
  • 49Kyle Gaulton, UCSD
Audit category:
  • 89inconsistent ontology term
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

193 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell5375
induced pluripotent stem cell9
pancreatic PP cell3
cardiac fibroblast1
tissue
islet of Langerhans36
cardiac atrium1
cardiac ventricle1
pancreas1
thymus1
cell line
EndoC_BH14116
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego