Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1279candidate regulatory elements
  • 944target gene predictions
  • 762histone modifications
  • 714binding sites
  • 699chromatin state
  • 409accessible chromatin
  • 194gene expression
  • 133eQTL
  • 73Fine-mapped variants
  • 50variant allelic effects
  • 20differential activity
  • 4variant to gene
  • 2other
  • 2sQTL
  • 1caQTL
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2092February, 2021
  • 1925September, 2022
  • 231June, 2020
  • 221February, 2024
  • 130May, 2021
  • 108March, 2020
  • 78August, 2021
  • 70October, 2022
  • 66January, 2022
  • 58May, 2020
  • 54January, 2020
  • 41February, 2020
  • 35November, 2022
  • 32March, 2025
  • 29August, 2017
  • 29March, 2024
  • 26February, 2023
  • 15March, 2023
  • 11November, 2019
  • 9May, 2022
  • 8May, 2019
  • 5October, 2019
  • 5September, 2023
  • 3September, 2018
  • 2April, 2019
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
Available data
  • 4263bed bed3+
  • 2950tsv
  • 662bed bed9
  • 120bigWig
  • 26bigBed bed9
  • 24csv
  • 7bed bed9+
  • 1bam
Organism
  • 7924Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1920EpiMap
  • 1619ChIP-Atlas
  • 724ENCODE
  • 245DGA
  • 1684DN
  • 150AMP
  • 135GTEx
  • 93 T2DKP
  • 88T1D
  • 83CMDGA
  • 63T2D
  • 63eQTLCatalogue
  • 47T2DKP
  • 37STARNET
  • 12HPAP
  • 8BLUEPRINT
Biosample type
  • 5109tissue
  • primary cell
  • 2343cell line
  • 469in vitro differentiated cells
  • 4stem cell
Organ
  • 2850bodily fluid
  • 2839blood
  • 2741vasculature
  • 2734blood vessel
  • 2638vein
  • 432brain
  • 343kidney
  • 330musculature of body
  • 277lung
  • 266intestine
  • 243limb
  • heart
  • 193embryo
  • 187connective tissue
  • 168large intestine
  • 151pancreas
  • 130epithelium
  • 108stomach
  • 106extraembryonic component
  • 104skin of body
  • 98adipose tissue
  • 98liver
  • 86eye
  • 80small intestine
  • 78uterus
  • 75bone element
  • 68prostate gland
  • 64ureter
  • 63placenta
  • 62adrenal gland
  • 62lymph node
  • 50artery
  • 48thymus
  • 46gonad
  • 41mammary gland
  • 39spinal cord
  • 35esophagus
  • 34spleen
  • 25nerve
  • 25testis
  • 24lymphoid tissue
  • 23penis
  • 21ovary
  • 20thyroid gland
  • 18skeleton
  • 15mouth
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 4lymphatic vessel
  • 4nose
Project
  • 7912AMP
  • 9community
  • 5ITG
  • 1T1D
Genome assembly (visualization)
  • 4958hg19
  • 1085GRCh38
  • 4hg18
biosample_type!
  • primary cell
organ_slims!
  • heart
BIOSAMPLE
TYPE

7927 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
binding sites
chromatin state
accessible chromatin
gene expression
eQTL
Fine-mapped variants
variant allelic effects
differential activity
variant to gene
other
sQTL
caQTL
representative DNase hypersensitivity sites
tissue
whole blood26351
stomach4021119311
kidney2914211610711
brain291631182121
lung33171611
cell line
HeLa-S355513
A549211912181
H1-hESC13912118
K5627231271
MCF-7962351
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910111011
adipocyte4611641
embryonic stem cell11156
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego