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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
49
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
399
Transcription
49
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
10
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bigWig
421
bam
399
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
464
Homo sapiens
Biosample type
464
tissue
primary cell
1
in vitro differentiated cells
Organ
670
liver
613
connective tissue
559
pancreas
465
adipose tissue
362
heart
309
kidney
240
brain
181
blood vessel
181
vasculature
158
bone element
130
artery
109
epithelium
105
limb
78
musculature of body
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
465
AMP
Genome assembly (visualization)
424
hg19
422
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
primary cell
organ_slims!
eye
target.investigated_as!
control
target.investigated_as!!
control
BIOSAMPLE
ASSAY
465 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
omental fat pad
5
3
1
2
1
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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