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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ATAC-seq
73
total RNA-seq
28
ChIP-seq
7
DNase-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
80
DNA accessibility
75
Transcription
28
DNA binding
Target of assay
22
histone
22
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
66
February, 2023
41
October, 2019
5
June, 2019
3
February, 2020
3
May, 2019
2
August, 2021
1
July, 2019
Available data
98
bed narrowPeak
97
bam
80
bigWig
61
tsv
22
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
Organism
187
Homo sapiens
Biosample type
121
tissue
66
cell line
primary cell
Organ
719
liver
616
connective tissue
558
pancreas
477
adipose tissue
342
heart
308
kidney
181
blood vessel
181
vasculature
158
bone element
151
brain
133
artery
107
limb
104
epithelium
73
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
187
AMP
Genome assembly (visualization)
123
GRCh38
115
hg19
Lab
187
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
ovary
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
187 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
36
1
3
2
tibial artery
1
1
19
2
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
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cell line
smooth muscle cell of the coronary artery
8
52
6
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