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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
38
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
49
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
30
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
1
March, 2020
Available data
100
bam
83
bigWig
74
bed narrowPeak
57
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
144
Homo sapiens
Biosample type
78
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
Genome assembly (visualization)
126
GRCh38
91
hg19
Lab
144
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
lung
pericardium
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
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