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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
69
DNA binding
61
Transcription
52
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
68
October, 2019
66
February, 2021
35
February, 2023
5
May, 2019
3
February, 2020
2
August, 2021
2
June, 2019
1
July, 2019
Available data
142
bam
114
bigWig
101
bed narrowPeak
61
tsv
51
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
182
Homo sapiens
Biosample type
116
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
Genome assembly (visualization)
157
GRCh38
122
hg19
Lab
182
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
52
8
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