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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
RRBS
Assay category
56
Transcription
49
DNA accessibility
34
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
100
bam
83
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
74
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
126
GRCh38
92
hg19
Lab
140
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
vein
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RRBS
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
pulmonary artery
2
pericardium
1
cell line
smooth muscle cell of the coronary artery
52
8
6
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