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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
48
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
189
DNA binding
162
Transcription
75
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
96
histone
96
histone modification
67
transcription factor
57
broad histone mark
39
narrow histone mark
24
control
20
RNA binding protein
10
chromatin remodeller
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
December, 2018
27
June, 2019
21
May, 2019
20
July, 2019
18
January, 2019
15
November, 2018
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
1
January, 2018
Available data
269
bigWig
259
bam
239
bed narrowPeak
164
tsv
142
bigBed narrowPeak
60
fastq
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
441
Homo sapiens
Biosample type
313
tissue
127
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
441
AMP
Genome assembly (visualization)
310
GRCh38
233
hg19
Lab
401
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent control
biosample_type!
primary cell
organ_slims!
gonad
lymph node
BIOSAMPLE
ASSAY
441 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
in vitro differentiated cells
cardiac fibroblast
1
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