Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
321
total RNA-seq
237
ChIP-seq
83
ATAC-seq
40
DNase-seq
12
Hi-C
12
snATAC-seq
10
MeRIP-seq
7
single cell RNA-seq
6
RRBS
5
WGBS
3
small RNA-seq
2
Capture-C
2
FAIRE-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
331
Transcription
237
DNA binding
137
DNA accessibility
12
3D chromatin structure
11
DNA methylation
Target of assay
119
histone
119
histone modification
70
transcription factor
67
broad histone mark
52
narrow histone mark
51
control
19
RNA binding protein
10
chromatin remodeller
5
nucleotide modification
Date released
173
August, 2017
120
July, 2018
61
May, 2021
55
November, 2019
51
October, 2018
36
June, 2019
27
December, 2018
26
February, 2021
26
May, 2022
22
November, 2018
19
February, 2023
19
March, 2020
18
January, 2019
18
October, 2019
13
July, 2019
10
November, 2020
9
May, 2019
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
5
October, 2017
4
August, 2021
3
February, 2020
2
January, 2018
1
August, 2022
Available data
599
bam
543
bigWig
316
tsv
275
fastq
251
bed narrowPeak
161
bigBed narrowPeak
66
bed broadPeak
62
bed bed3+
39
bigBed broadPeak
34
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
7
txt
6
bedpe bed3+
6
hic
1
bedpe
1
hdf5
Organism
735
Homo sapiens
Biosample type
587
tissue
primary cell
153
cell line
3
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
709
AMP
34
T1D
Genome assembly (visualization)
589
hg19
539
GRCh38
Lab
674
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
77
inconsistent ontology term
2
audit script error
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
organ_slims!
spleen
BIOSAMPLE
ASSAY
743 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
RRBS
WGBS
small RNA-seq
Capture-C
FAIRE-seq
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
278
50
58
1
3
7
4
6
1
1
body of pancreas
3
35
4
4
2
2
skeletal muscle tissue
1
22
1
1
1
4
1
pancreas
2
16
2
1
4
1
2
1
1
muscle of leg
7
13
1
+ See 7 more…
cell line
EndoC_BH1
33
15
19
1
6
2
1
GM12878
60
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
See all biosamples
Download