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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
59
total RNA-seq
47
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
143
DNA binding
65
Transcription
52
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
59
histone
59
histone modification
58
transcription factor
36
broad histone mark
24
control
23
narrow histone mark
13
RNA binding protein
10
chromatin remodeller
Date released
66
February, 2021
50
May, 2019
35
February, 2023
30
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
7
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
June, 2019
1
January, 2018
Available data
213
bam
181
bigWig
166
bed narrowPeak
116
bigBed narrowPeak
67
tsv
60
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
265
Homo sapiens
Biosample type
138
tissue
127
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
223
GRCh38
189
hg19
Lab
265
AMP-T2D consortium
Audit category:
1
inconsistent control
biosample_type!
primary cell
organ_slims!
lung
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
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