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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 59total RNA-seq
  • 46ATAC-seq
  • 6single cell RNA-seq
  • 5DNase-seq
  • 2WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 79DNA binding
  • 65Transcription
  • 51DNA accessibility
  • 2DNA methylation
  • 13D chromatin structure
Target of assay
  • 54histone
  • 54histone modification
  • 36broad histone mark
  • 18control
  • 18narrow histone mark
  • 7transcription factor
  • 3RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 35February, 2023
  • 26October, 2019
  • 7July, 2019
  • 6August, 2021
  • 3February, 2020
  • 3June, 2019
  • 3March, 2020
Available data
  • 153bam
  • 126bigWig
  • 112bed narrowPeak
  • 66tsv
  • 62bigBed narrowPeak
  • 6tagAlign
  • 5bed bed3+
  • 5bed broadPeak
  • 5bigBed broadPeak
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 199Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • primary cell
Organ
  • 777liver
  • 645connective tissue
  • 600pancreas
  • 489adipose tissue
  • 380heart
  • 318kidney
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 122limb
  • 118epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 199AMP
Genome assembly (visualization)
  • 169GRCh38
  • 134hg19
Lab
  • 199AMP-T2D consortium
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

199 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery51362
tibial artery23112
aorta1314211
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
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