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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
30
ATAC-seq
24
total RNA-seq
5
DNase-seq
5
pCHi-C
Assay category
101
DNA binding
35
DNA accessibility
24
Transcription
Target of assay
51
transcription factor
31
histone
31
histone modification
17
control
16
broad histone mark
15
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
67
October, 2019
31
February, 2023
27
December, 2018
18
January, 2019
15
November, 2018
3
June, 2019
2
February, 2020
1
January, 2018
1
March, 2020
Available data
111
bed narrowPeak
105
bam
89
bigWig
83
bigBed narrowPeak
60
fastq
11
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
Organism
165
Homo sapiens
Biosample type
104
tissue
61
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
116
hg19
88
GRCh38
Lab
165
AMP-T2D consortium
Audit category:
1
inconsistent control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
1
5
2
islet of Langerhans
6
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
ovary
1
cell line
GM12878
60
1
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