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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
30
ATAC-seq
19
total RNA-seq
4
pCHi-C
3
DNase-seq
Assay category
63
DNA binding
33
DNA accessibility
19
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
23
October, 2019
18
January, 2019
15
November, 2018
3
June, 2019
1
February, 2020
1
January, 2018
Available data
85
bed narrowPeak
64
bam
60
fastq
59
bigWig
57
bigBed narrowPeak
5
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
tagAlign
Organism
119
Homo sapiens
Biosample type
61
cell line
58
tissue
primary cell
Organ
777
liver
644
connective tissue
592
pancreas
488
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
117
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
86
hg19
58
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
1
inconsistent control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
cell line
GM12878
60
1
tissue
islet of Langerhans
2
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
pituitary gland
1
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