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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
12
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
4
ChIP-seq
2
pCHi-C
1
RRBS
Assay category
71
Transcription
22
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
150
February, 2021
19
April, 2020
8
February, 2023
4
October, 2019
2
March, 2020
1
July, 2019
Available data
88
txt
66
bam
60
tsv
58
bigWig
8
bed narrowPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
183
Homo sapiens
Biosample type
184
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
19
LungMap
Genome assembly (visualization)
71
hg19
66
GRCh38
Lab
165
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
84
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
184 results
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RNA microarray
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
bone element
84
bone tissue
58
lung
10
9
1
islet of Langerhans
4
acetabular part of hip bone
1
1
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