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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
ChIP-seq
31
total RNA-seq
27
DNase-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
231
DNA binding
35
Transcription
32
DNA accessibility
1
DNA methylation
Target of assay
196
histone
196
histone modification
122
narrow histone mark
74
broad histone mark
32
control
3
transcription factor
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
13
December, 2017
13
February, 2018
12
February, 2020
11
July, 2019
8
August, 2021
3
March, 2020
2
May, 2021
2
November, 2018
1
February, 2023
1
January, 2018
Available data
262
bam
231
bigWig
206
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
39
fastq
38
tsv
36
bed broadPeak
30
bed bed3+
27
bigBed broadPeak
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
303
Homo sapiens
Biosample type
265
tissue
29
in vitro differentiated cells
primary cell
9
cell line
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
303
AMP
Genome assembly (visualization)
232
GRCh38
172
hg19
1
hg18
Lab
303
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
303 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
GRO-seq
RRBS
tissue
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
MCF-7
1
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