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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
45
DNase-seq
17
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
60
DNA accessibility
30
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
43
June, 2019
28
May, 2019
19
April, 2020
16
October, 2017
12
February, 2020
11
July, 2019
3
March, 2020
2
November, 2018
1
February, 2023
Available data
244
bam
220
bigWig
210
bed narrowPeak
134
bigBed narrowPeak
118
tagAlign
54
bed broadPeak
45
bed bed3+
45
bigBed broadPeak
24
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
302
Homo sapiens
Biosample type
303
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
284
AMP
19
LungMap
Genome assembly (visualization)
221
GRCh38
161
hg19
Lab
284
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
303 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
lung
10
9
1
caudate nucleus
15
1
1
substantia nigra
16
1
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