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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 209ChIP-seq
  • 27DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 209DNA binding
  • 32DNA accessibility
  • 21Transcription
  • 1DNA methylation
Target of assay
  • 184histone
  • 184histone modification
  • 114narrow histone mark
  • 70broad histone mark
  • 25control
Date released
  • 86October, 2019
  • 82November, 2017
  • 28May, 2019
  • 25June, 2019
  • 16October, 2017
  • 12February, 2020
  • 11July, 2019
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 226bam
  • 202bigWig
  • 192bed narrowPeak
  • 118tagAlign
  • 116bigBed narrowPeak
  • 36bed broadPeak
  • 27bed bed3+
  • 27bigBed broadPeak
  • 23tsv
  • 12fastq
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tagAlign bed3+
Organism
  • 265Homo sapiens
Biosample type
  • 265tissue
  • primary cell
Organ
  • 777liver
  • 645connective tissue
  • 600pancreas
  • 489adipose tissue
  • 380heart
  • 318kidney
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 122limb
  • 118epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 265AMP
Genome assembly (visualization)
  • 203GRCh38
  • 143hg19
Lab
  • 265AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

265 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain2014111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
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