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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 464total RNA-seq
  • 141ChIP-seq
  • 23ATAC-seq
  • 6WGBS
  • 3DNase-seq
  • 3pCHi-C
  • 2Capture-C
  • 2small RNA-seq
  • 1RNA microarray
Assay category
  • 466Transcription
  • 141DNA binding
  • 26DNA accessibility
  • 6DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 40broad histone mark
  • 39transcription factor
  • 32control
  • 29narrow histone mark
  • 9RNA binding protein
  • 2chromatin remodeller
Date released
  • 452February, 2021
  • 125August, 2017
  • 23October, 2018
  • 14February, 2023
  • 10July, 2019
  • 5August, 2021
  • 4October, 2019
  • 2February, 2020
  • 2March, 2020
  • 1August, 2018
  • 1January, 2018
  • 1June, 2019
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 557bam
  • 538bigWig
  • 463tsv
  • 98fastq
  • 58bed narrowPeak
  • 22tagAlign
  • 19bed bed3+
  • 13bigBed narrowPeak
  • 5bed bed3
  • 4bed bedgraph
  • 4bed broadPeak
  • 3bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe bed3+
Organism
  • 644Homo sapiens
Biosample type
  • 547tissue
  • 97in vitro differentiated cells
  • primary cell
  • 1stem cell
Organ
  • 777liver
  • 645connective tissue
  • 600pancreas
  • 489adipose tissue
  • 380heart
  • 318kidney
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 122limb
  • 118epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 645AMP
Genome assembly (visualization)
  • 555hg19
  • 534GRCh38
Lab
  • 641AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

645 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511121
in vitro differentiated cells
adipocyte567811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
stem cell
mesenchymal stem cell1
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