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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 38total RNA-seq
  • 37ChIP-seq
  • 31ATAC-seq
  • 6MeRIP-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNase-seq
  • 1Hi-C
  • 1RNA microarray
Assay category
  • 38Transcription
  • 37DNA binding
  • 32DNA accessibility
  • 13D chromatin structure
Target of assay
  • 27histone
  • 27histone modification
  • 14narrow histone mark
  • 13broad histone mark
  • 9control
  • 4transcription factor
  • 3RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 26February, 2021
  • 26May, 2021
  • 19December, 2017
  • 16November, 2019
  • 15February, 2023
  • 6November, 2020
  • 5March, 2020
  • 2August, 2021
  • 2October, 2019
  • 1December, 2019
Available data
  • 75bam
  • 70bigWig
  • 45bed narrowPeak
  • 40tsv
  • 19fastq
  • 15bigBed narrowPeak
  • 3tagAlign
  • 1bedpe bed3+
  • 1hic
Organism
  • 117Homo sapiens
Biosample type
  • primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 777liver
  • 645connective tissue
  • 600pancreas
  • 489adipose tissue
  • 380heart
  • 318kidney
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 122limb
  • 118epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 114AMP
  • 4T1D
Genome assembly (visualization)
  • 84hg19
  • 69GRCh38
Lab
  • 112AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 81inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

118 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH13315196211
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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