Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
59
total RNA-seq
47
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
65
Transcription
61
DNA binding
52
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
36
May, 2019
35
February, 2023
23
October, 2019
7
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
June, 2019
Available data
135
bam
108
bigWig
94
bed narrowPeak
67
tsv
44
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
183
Homo sapiens
Biosample type
117
tissue
66
cell line
primary cell
Organ
719
liver
616
connective tissue
558
pancreas
477
adipose tissue
342
heart
308
kidney
181
blood vessel
181
vasculature
158
bone element
151
brain
133
artery
107
limb
104
epithelium
73
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
Genome assembly (visualization)
151
GRCh38
116
hg19
Lab
183
AMP-T2D consortium
biosample_type!
primary cell
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
3
1
36
2
tibial artery
19
1
1
2
aorta
9
1
4
2
1
1
ascending aorta
12
2
1
thoracic aorta
12
2
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
See all biosamples
Download