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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
677
ChIP-seq
252
total RNA-seq
94
single cell RNA-seq
69
ATAC-seq
31
DNase-seq
13
WGBS
6
Hi-C
6
pCHi-C
4
small RNA-seq
3
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
677
DNA binding
350
Transcription
100
DNA accessibility
16
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Target of assay
354
transcription factor
195
histone modification
194
histone
125
control
98
broad histone mark
96
narrow histone mark
82
recombinant protein
68
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
123
August, 2021
69
February, 2021
63
December, 2017
57
April, 2019
54
August, 2017
53
November, 2018
40
May, 2022
40
May, 2024
36
February, 2023
29
July, 2019
27
June, 2019
21
May, 2019
14
October, 2019
10
March, 2020
5
January, 2019
4
February, 2020
3
May, 2021
1
December, 2018
Available data
868
bam
825
bigWig
620
bed narrowPeak
465
fastq
444
bigBed narrowPeak
333
tsv
88
bed broadPeak
88
bigBed broadPeak
88
tagAlign
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
1158
Homo sapiens
Biosample type
675
tissue
467
cell line
primary cell
16
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
1158
AMP
Genome assembly (visualization)
791
hg19
776
GRCh38
Lab
1047
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
1158 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
tissue
liver
145
167
1
20
2
3
1
1
1
1
heart left ventricle
35
3
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
4
1
18
1
1
1
+ See 13 more…
cell line
HepG2
378
14
1
1
2
2
2
1
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
hepatocyte
15
cardiac fibroblast
1
See all biosamples
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