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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 69DNase-seq
  • 64single cell RNA-seq
  • 54total RNA-seq
  • 37ChIP-seq
  • 6snATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1RRBS
  • 1small RNA-seq
Assay category
  • 151DNA accessibility
  • 119Transcription
  • 37DNA binding
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 20histone
  • 20histone modification
  • 10broad histone mark
  • 10narrow histone mark
  • 9control
  • 8transcription factor
  • 7recombinant protein
  • 1RNA binding protein
Date released
  • 130August, 2021
  • 68June, 2019
  • 47September, 2023
  • 23April, 2019
  • 19October, 2019
  • 14May, 2023
  • 8February, 2021
  • 4July, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 161bed narrowPeak
  • 113bam
  • 103bigWig
  • 88bigBed narrowPeak
  • 68bed bed3+
  • 68bed broadPeak
  • 68bigBed broadPeak
  • 64xls
  • 62txt
  • 18tsv
  • 5csv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 318Homo sapiens
Biosample type
  • 299tissue
  • primary cell
  • 19cell line
Organ
  • 777liver
  • 645connective tissue
  • 600pancreas
  • 489adipose tissue
  • 380heart
  • 318kidney
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 122limb
  • 118epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 271AMP
  • 47KPMP
Genome assembly (visualization)
  • 177GRCh38
  • 104hg19
Lab
  • 142Katalin Susztak, Upenn
  • 127AMP-T2D consortium
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
  • 7audit script error
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

318 results

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Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney75136449276111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
glomerular visceral epithelial cell11
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