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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
490
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
490
DNA binding
188
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
34
November, 2018
30
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
612
bam
555
bigWig
408
fastq
379
bed narrowPeak
301
bigBed narrowPeak
169
tsv
82
tagAlign
57
bed broadPeak
57
bigBed broadPeak
7
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tar
1
bed bed3
1
csv
1
vcf
Organism
719
Homo sapiens
Biosample type
359
tissue
347
cell line
primary cell
13
in vitro differentiated cells
Organ
719
liver
636
connective tissue
591
pancreas
484
adipose tissue
370
heart
317
kidney
265
brain
196
blood vessel
196
vasculature
158
bone element
138
artery
122
limb
115
epithelium
82
musculature of body
56
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
719
AMP
Genome assembly (visualization)
557
hg19
469
GRCh38
Lab
649
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
biosample_type!
primary cell
organ_slims!
adrenal gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
719 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
144
167
20
3
2
1
1
1
1
1
right lobe of liver
9
3
1
1
2
2
cell line
HepG2
324
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
13
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