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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 316total RNA-seq
  • 148ChIP-seq
  • 81ATAC-seq
  • 11snATAC-seq
  • 10MeRIP-seq
  • 8DNase-seq
  • 6Hi-C
  • 6single cell RNA-seq
  • 4WGBS
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 324Transcription
  • 148DNA binding
  • 102DNA accessibility
  • 63D chromatin structure
  • 6DNA methylation
Target of assay
  • 93histone
  • 93histone modification
  • 51broad histone mark
  • 42narrow histone mark
  • 41control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 147August, 2017
  • 120July, 2018
  • 61May, 2021
  • 55November, 2019
  • 51October, 2018
  • 26February, 2021
  • 24May, 2022
  • 19February, 2023
  • 18October, 2019
  • 14March, 2020
  • 10November, 2020
  • 8January, 2021
  • 7November, 2018
  • 6April, 2018
  • 6July, 2019
  • 6September, 2017
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
Available data
  • 495bam
  • 431bigWig
  • 309tsv
  • 213fastq
  • 146bed narrowPeak
  • 69bigBed narrowPeak
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 4bedpe bed3+
  • 4hic
  • 1bedpe
  • 1hdf5
Organism
  • 592Homo sapiens
Biosample type
  • 505tissue
  • primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 777liver
  • 645connective tissue
  • 600pancreas
  • 489adipose tissue
  • 380heart
  • 318kidney
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 122limb
  • 118epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 566AMP
  • 34T1D
Genome assembly (visualization)
  • 473hg19
  • 443GRCh38
Lab
  • 531AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 76inconsistent ontology term
  • 1audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

600 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans27850587413611
body of pancreas3354422
pancreas2164212111
endocrine pancreas16
cell line
EndoC_BH13315196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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