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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1585ChIP-seq
  • 331ATAC-seq
  • 181DNase-seq
  • 40pCHi-C
  • 28WGBS
  • 27snATAC-seq
  • 24Hi-C
  • 11RRBS
  • 9total RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1whole genome sequencing assay
Assay category
  • 1585DNA binding
  • 543DNA accessibility
  • 39DNA methylation
  • 243D chromatin structure
  • 9Transcription
  • 1DNA sequencing
Target of assay
  • 774histone modification
  • 773histone
  • 504transcription factor
  • 397narrow histone mark
  • 375broad histone mark
  • 302control
  • 104RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 397November, 2017
  • 256August, 2017
  • 256October, 2019
  • 163June, 2019
  • 129August, 2021
  • 115May, 2019
  • 98February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66May, 2021
  • 51May, 2020
  • 48March, 2020
  • 41November, 2019
  • 40May, 2024
  • 39May, 2022
  • 35December, 2018
  • 30February, 2021
  • 30January, 2019
  • 30July, 2019
  • 24February, 2018
  • 23October, 2017
  • 11May, 2023
  • 9April, 2020
  • 8January, 2018
  • 8January, 2021
  • 6September, 2017
  • 5March, 2019
  • 1August, 2018
  • 1August, 2022
Available data
  • 1631bam
  • 1516bed narrowPeak
  • 1411bigWig
  • 927bigBed narrowPeak
  • 824fastq
  • 291tagAlign
  • 267bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 64xls
  • 42tsv
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 4txt
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2255Homo sapiens
Biosample type
  • 1452tissue
  • primary cell
  • 539cell line
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 592liver
  • 258pancreas
  • 244brain
  • 218heart
  • 192kidney
  • 178connective tissue
  • 134blood vessel
  • 134vasculature
  • 119limb
  • 89adipose tissue
  • 83artery
  • 75musculature of body
  • 72epithelium
  • 61blood
  • 61bodily fluid
  • 42nerve
  • 37eye
  • 25spleen
  • 23embryo
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2215AMP
  • 31T1D
  • 9LungMap
Genome assembly (visualization)
  • 1445GRCh38
  • 1439hg19
  • 5hg18
Lab
  • 1983AMP-T2D consortium
  • 87Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 80inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 45missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

2255 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
RRBS
total RNA-seq
GRO-seq
Capture-C
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
whole genome sequencing assay
tissue
liver1452021311
islet of Langerhans7168147311
kidney2775136111
heart left ventricle35231411
body of pancreas35442
cell line
HepG2378121251
GM12878601
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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