Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 636ChIP-seq
  • 152total RNA-seq
  • 82ATAC-seq
  • 32pCHi-C
  • 26DNase-seq
  • 11single cell RNA-seq
  • 10Hi-C
  • 10MeRIP-seq
  • 10snATAC-seq
  • 9RRBS
  • 9small RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2WGBS
  • 2snDrop-seq
Assay category
  • 636DNA binding
  • 172Transcription
  • 121DNA accessibility
  • 11DNA methylation
  • 103D chromatin structure
Target of assay
  • 411transcription factor
  • 157histone
  • 157histone modification
  • 96narrow histone mark
  • 88recombinant protein
  • 73RNA binding protein
  • 68control
  • 61broad histone mark
  • 31chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 289November, 2017
  • 102October, 2019
  • 64November, 2018
  • 62August, 2021
  • 62December, 2017
  • 56May, 2021
  • 47March, 2020
  • 41February, 2023
  • 37August, 2017
  • 34February, 2021
  • 29July, 2019
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 21June, 2019
  • 10May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7October, 2017
  • 6April, 2018
  • 5March, 2019
  • 3January, 2021
  • 2April, 2019
  • 2December, 2019
  • 2July, 2018
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1May, 2020
Available data
  • 804bam
  • 728bigWig
  • 601bed narrowPeak
  • 522fastq
  • 452bigBed narrowPeak
  • 182tsv
  • 84bed broadPeak
  • 82bigBed broadPeak
  • 80bed bed3+
  • 80tagAlign
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 9bedpe bed3+
  • 8txt
  • 7bed bedgraph
  • 7hic
  • 6bed bed3
  • 3tar
  • 2ibed
  • 1bedpe
  • 1csv
  • 1hdf5
  • 1tagAlign bed3+
Organism
  • 1003Homo sapiens
Biosample type
  • primary cell
  • 463cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 415liver
  • 127pancreas
  • 79brain
  • 56blood
  • 56bodily fluid
  • 41connective tissue
  • 33kidney
  • 32heart
  • 31epithelium
  • 18blood vessel
  • 18vasculature
  • 15adipose tissue
  • 13embryo
  • 10musculature of body
  • 9artery
  • 8bone element
  • 8limb
  • 8skeleton
  • 3eye
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 970AMP
  • 33T1D
Genome assembly (visualization)
  • 798hg19
  • 709GRCh38
Lab
  • 923AMP-T2D consortium
  • 45Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 90inconsistent ontology term
  • 28inconsistent control
  • 3audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 37inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1003 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
snATAC-seq
RRBS
small RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
WGBS
snDrop-seq
cell line
HepG2335512121
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans221037162431
liver4231111
brain111121
heart534111
kidney12411
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego