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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
107
total RNA-seq
47
ATAC-seq
23
pCHi-C
22
DNase-seq
9
single cell RNA-seq
9
small RNA-seq
4
Hi-C
4
MeRIP-seq
3
FAIRE-seq
3
snATAC-seq
2
Capture-C
2
snDrop-seq
Assay category
125
Transcription
120
DNA binding
75
DNA accessibility
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
57
narrow histone mark
33
transcription factor
17
broad histone mark
15
control
9
RNA binding protein
2
nucleotide modification
Date released
54
May, 2021
46
October, 2019
44
August, 2021
35
February, 2023
33
August, 2017
31
March, 2020
25
February, 2020
22
July, 2019
20
June, 2019
8
February, 2021
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2017
2
July, 2018
2
May, 2022
2
November, 2018
2
September, 2017
1
April, 2019
1
February, 2018
1
November, 2019
1
October, 2018
Available data
215
bam
202
bigWig
129
tsv
114
bed narrowPeak
66
tagAlign
61
bed bed3+
52
fastq
31
bigBed narrowPeak
23
bed broadPeak
21
bigBed broadPeak
5
bed bed3
5
txt
3
bedpe bed3+
3
hic
1
bedpe
1
csv
1
tagAlign bed3+
Organism
355
Homo sapiens
Biosample type
primary cell
242
tissue
112
in vitro differentiated cells
1
stem cell
Organ
71
brain
71
pancreas
36
connective tissue
20
heart
15
adipose tissue
12
liver
9
kidney
8
bone element
8
skeleton
7
musculature of body
4
blood vessel
4
vasculature
3
eye
3
limb
2
artery
2
embryo
2
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
333
AMP
22
T1D
Genome assembly (visualization)
227
hg19
206
GRCh38
Lab
301
AMP-T2D consortium
38
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
355 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snATAC-seq
Capture-C
snDrop-seq
tissue
islet of Langerhans
22
10
18
1
6
2
4
2
liver
6
2
1
1
1
brain
6
1
2
heart
2
4
1
1
1
frontal cortex
2
2
1
1
+ See 101 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
embryonic stem cell
11
5
4
1
adipocyte
7
1
4
1
cardiomyocytes
12
induced pluripotent stem cell
9
+ See 15 more…
stem cell
mesenchymal stem cell
1
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