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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 120ChIP-seq
  • 107total RNA-seq
  • 47ATAC-seq
  • 23pCHi-C
  • 22DNase-seq
  • 9single cell RNA-seq
  • 9small RNA-seq
  • 4Hi-C
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 3snATAC-seq
  • 2Capture-C
  • 2snDrop-seq
Assay category
  • 125Transcription
  • 120DNA binding
  • 75DNA accessibility
  • 43D chromatin structure
Target of assay
  • 74histone
  • 74histone modification
  • 57narrow histone mark
  • 33transcription factor
  • 17broad histone mark
  • 15control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 54May, 2021
  • 46October, 2019
  • 44August, 2021
  • 35February, 2023
  • 33August, 2017
  • 31March, 2020
  • 25February, 2020
  • 22July, 2019
  • 20June, 2019
  • 8February, 2021
  • 7October, 2017
  • 6April, 2018
  • 5March, 2019
  • 4November, 2020
  • 3December, 2017
  • 2July, 2018
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1November, 2019
  • 1October, 2018
Available data
  • 215bam
  • 202bigWig
  • 129tsv
  • 114bed narrowPeak
  • 66tagAlign
  • 61bed bed3+
  • 52fastq
  • 31bigBed narrowPeak
  • 23bed broadPeak
  • 21bigBed broadPeak
  • 5bed bed3
  • 5txt
  • 3bedpe bed3+
  • 3hic
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
Organism
  • 355Homo sapiens
Biosample type
  • primary cell
  • 242tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 71brain
  • 71pancreas
  • 36connective tissue
  • 20heart
  • 15adipose tissue
  • 12liver
  • 9kidney
  • 8bone element
  • 8skeleton
  • 7musculature of body
  • 4blood vessel
  • 4vasculature
  • 3eye
  • 3limb
  • 2artery
  • 2embryo
  • 2epithelium
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 333AMP
  • 22T1D
Genome assembly (visualization)
  • 227hg19
  • 206GRCh38
Lab
  • 301AMP-T2D consortium
  • 38Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 26inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

355 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snATAC-seq
Capture-C
snDrop-seq
tissue
islet of Langerhans22101816242
liver62111
brain612
heart24111
frontal cortex2211
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11541
adipocyte7141
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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