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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 516ChIP-seq
  • 45total RNA-seq
  • 35ATAC-seq
  • 9RRBS
  • 9pCHi-C
  • 7snATAC-seq
  • 6Hi-C
  • 6MeRIP-seq
  • 4DNase-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2WGBS
  • 2single cell RNA-seq
Assay category
  • 516DNA binding
  • 47Transcription
  • 46DNA accessibility
  • 11DNA methylation
  • 63D chromatin structure
Target of assay
  • 378transcription factor
  • 88recombinant protein
  • 83histone
  • 83histone modification
  • 64RNA binding protein
  • 53control
  • 44broad histone mark
  • 39narrow histone mark
  • 31chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 289November, 2017
  • 62November, 2018
  • 59December, 2017
  • 56October, 2019
  • 28December, 2018
  • 26February, 2021
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16March, 2020
  • 10May, 2019
  • 7July, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 4August, 2017
  • 3January, 2021
  • 2December, 2019
  • 2May, 2021
  • 1April, 2019
  • 1June, 2019
  • 1May, 2020
Available data
  • 589bam
  • 526bigWig
  • 487bed narrowPeak
  • 470fastq
  • 421bigBed narrowPeak
  • 61bed broadPeak
  • 61bigBed broadPeak
  • 53tsv
  • 19bed bed3+
  • 14tagAlign
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hic
  • 3tar
  • 3txt
  • 2ibed
  • 1bed bed3
  • 1hdf5
Organism
  • 648Homo sapiens
Biosample type
  • 463cell line
  • primary cell
  • 111tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 403liver
  • 56blood
  • 56bodily fluid
  • 56pancreas
  • 29epithelium
  • 24kidney
  • 14blood vessel
  • 14vasculature
  • 12heart
  • 11embryo
  • 8brain
  • 7artery
  • 5connective tissue
  • 5limb
  • 3musculature of body
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 637AMP
  • 11T1D
Genome assembly (visualization)
  • 571hg19
  • 503GRCh38
Lab
  • 622AMP-T2D consortium
  • 7Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 64inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

648 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
snATAC-seq
Hi-C
MeRIP-seq
DNase-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
WGBS
single cell RNA-seq
cell line
HepG2335512121
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
RCC 7860 HIF2a over-expression31
HEK293T2
glomerular visceral epithelial cell11
smooth muscle cell of the coronary artery2
MCF-71
RCC 7860 VHL1
early embryonic cell1
fibroblast cell line1
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
heart51
kidney14
tibial artery4
pancreas12
right lobe of liver21
heart left ventricle11
skeletal muscle tissue2
coronary artery1
middle frontal gyrus1
muscle of leg1
pericardium1
right atrium auricular region1
thymus1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1911
hepatocyte15
cardiomyocytes (cardiac muscle cell)21122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut3
definitive endodermal cell3
lymphocyte of B lineage (iPSC)111
pancreatic endoderm3
primitive gut cell3
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
hESC3
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