Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2639pQTL
  • 767histone modifications
  • 747chromatin state
  • 717binding sites
  • 670candidate regulatory elements
  • 429accessible chromatin
  • 312target gene predictions
  • 136eQTL
  • 82Fine-mapped variants
  • 60variant allelic effects
  • 20differential activity
  • 6gene expression
  • 4variant to gene
  • 2caQTL
  • 2other
  • 2sQTL
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2079February, 2021
  • 679September, 2022
  • 236June, 2020
  • 198February, 2024
  • 116March, 2020
  • 111May, 2021
  • 70October, 2022
  • 69January, 2022
  • 69May, 2020
  • 58August, 2021
  • 49January, 2020
  • 35November, 2022
  • 32March, 2025
  • 29August, 2017
  • 28February, 2023
  • 26February, 2020
  • 15March, 2023
  • 14November, 2019
  • 9May, 2019
  • 9May, 2022
  • 8April, 2019
  • 7October, 2019
  • 5September, 2023
  • 3September, 2018
  • 1August, 2020
  • 1August, 2022
Available data
  • 3065bed bed3+
  • 2776tsv
  • 705bed bed9
  • 136bigWig
  • 36bigBed bed9
  • 7bed bed9+
  • 1bam
Organism
  • 6593Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1632ChIP-Atlas
  • 741ENCODE
  • 673EpiMap
  • 241DGA
  • 1684DN
  • 96GTEx
  • 85CMDGA
  • 75T1D
  • 68AMP
  • 66T2D
  • 66eQTLCatalogue
  • 62 T2DKP
  • 43T2DKP
  • 37STARNET
  • 12HPAP
  • 8BLUEPRINT
Biosample type
  • 4291tissue
  • 1973cell line
  • primary cell
  • 326in vitro differentiated cells
  • 4stem cell
Organ
  • 2798bodily fluid
  • 2792blood
  • 2715vasculature
  • 2708blood vessel
  • 2637vein
  • 301brain
  • 198kidney
  • 193musculature of body
  • 153intestine
  • 146limb
  • 144lung
  • 141heart
  • 139connective tissue
  • 137embryo
  • 100epithelium
  • 100large intestine
  • 99pancreas
  • 73eye
  • 70adipose tissue
  • 68liver
  • 68skin of body
  • 68uterus
  • 60stomach
  • 56extraembryonic component
  • 46lymph node
  • 45bone element
  • 45prostate gland
  • 42small intestine
  • 39artery
  • 38ureter
  • 33adrenal gland
  • 33placenta
  • 28gonad
  • 27mammary gland
  • 26thymus
  • 24spinal cord
  • 21esophagus
  • 21spleen
  • 17nerve
  • 16testis
  • 15penis
  • 13lymphoid tissue
  • 12ovary
  • 12pituitary gland
  • 12skeleton
  • 11thyroid gland
  • 8breast
  • 8mouth
  • 5tongue
  • 5urinary bladder
  • 5vagina
  • 4lymphatic vessel
  • 2nose
Project
  • 6581AMP
  • 9community
  • 5ITG
  • 1T1D
Genome assembly (visualization)
  • 3811hg19
  • 1164GRCh38
  • 4hg18
biosample_type!
  • primary cell
software_used.software.name!
  • r
BIOSAMPLE
TYPE

6596 results

search-icontable-tab-icon
Clear Filters
pQTL
histone modifications
chromatin state
binding sites
candidate regulatory elements
accessible chromatin
target gene predictions
eQTL
Fine-mapped variants
variant allelic effects
differential activity
gene expression
variant to gene
caQTL
other
sQTL
representative DNase hypersensitivity sites
tissue
whole blood2635
heart121118512
stomach11921321
kidney2161151011
brain318113221
cell line
HeLa-S331252
H1-hESC112138
K5621721117
A5491182311
breast cancer cell119
in vitro differentiated cells
neural progenitor cell1541101
hematopoietic multipotent progenitor cell110191
adipocyte161244
embryonic stem cell15161
T-cell acute lymphoblastic leukemia53
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego