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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 379ChIP-seq
Assay category
  • 379DNA binding
Target of assay
  • 780histone modification
  • 779histone
  • 504transcription factor
  • 399narrow histone mark
  • 379broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 93August, 2017
  • 56May, 2019
  • 50November, 2017
  • 43October, 2019
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 15December, 2017
  • 10May, 2021
  • 10October, 2017
  • 8August, 2021
  • 8February, 2018
  • 6November, 2019
  • 4January, 2019
Available data
  • 309bigWig
  • 308bed narrowPeak
  • 278bam
  • 221bigBed narrowPeak
  • 96tagAlign
  • 85fastq
  • 28bed broadPeak
  • 11bed bed3+
  • 8bigBed broadPeak
Organism
  • 375Homo sapiens
Biosample type
  • 303tissue
  • primary cell
  • 56in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 70brain
  • 57heart
  • 51pancreas
  • 41liver
  • 40connective tissue
  • 36blood vessel
  • 36vasculature
  • 34limb
  • 20adipose tissue
  • 16musculature of body
  • 16nerve
  • 14artery
  • 13epithelium
  • 10kidney
  • 4embryo
  • 4spleen
Project
  • 379AMP
Genome assembly (visualization)
  • 296GRCh38
  • 253hg19
Lab
  • 348AMP-T2D consortium
  • 20Patrick T. Ellinor, Broad
  • 10Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 6inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

379 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
cell line
HepG29
EndoC_BH16
Panc14
stem cell
hESC1
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