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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 780ChIP-seq
Assay category
  • 780DNA binding
Target of assay
  • 780histone modification
  • 779histone
  • 504transcription factor
  • 399narrow histone mark
  • 379broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 175October, 2019
  • 161August, 2017
  • 89May, 2019
  • 85November, 2017
  • 60April, 2019
  • 35May, 2024
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 22May, 2021
  • 17August, 2021
  • 16February, 2018
  • 12October, 2017
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
Available data
  • 639bigWig
  • 635bed narrowPeak
  • 582bam
  • 344bigBed narrowPeak
  • 223tagAlign
  • 157fastq
  • 49bed broadPeak
  • 22bed bed3+
  • 14bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 774Homo sapiens
Biosample type
  • 628tissue
  • primary cell
  • 112in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 184brain
  • 100liver
  • 95heart
  • 93pancreas
  • 70connective tissue
  • 54blood vessel
  • 54vasculature
  • 49limb
  • 32adipose tissue
  • 27epithelium
  • 25musculature of body
  • 24nerve
  • 20artery
  • 20kidney
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 2eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 776AMP
  • 4T1D
Genome assembly (visualization)
  • 606GRCh38
  • 554hg19
Lab
  • 722AMP-T2D consortium
  • 35Patrick T. Ellinor, Broad
  • 20Kyle Gaulton, UCSD
  • 3Bing Ren, UCSD
Audit category:
  • 16inconsistent ontology term
Audit category:
  • 10missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

780 results

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Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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