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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 399ChIP-seq
Assay category
  • 399DNA binding
Target of assay
  • 780histone modification
  • 779histone
  • 504transcription factor
  • 399narrow histone mark
  • 379broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 132October, 2019
  • 66August, 2017
  • 35November, 2017
  • 33May, 2019
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 12May, 2021
  • 11October, 2018
  • 9August, 2021
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 328bigWig
  • 325bed narrowPeak
  • 302bam
  • 127tagAlign
  • 123bigBed narrowPeak
  • 70fastq
  • 21bed broadPeak
  • 11bed bed3+
  • 6bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 397Homo sapiens
Biosample type
  • 324tissue
  • primary cell
  • 55in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 114brain
  • 58liver
  • 42pancreas
  • 38heart
  • 29connective tissue
  • 18blood vessel
  • 18vasculature
  • 15limb
  • 14epithelium
  • 12adipose tissue
  • 10kidney
  • 9musculature of body
  • 8embryo
  • 8nerve
  • 6artery
  • 4gonad
  • 4ovary
  • 2eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 395AMP
  • 4T1D
Genome assembly (visualization)
  • 308GRCh38
  • 299hg19
Lab
  • 372AMP-T2D consortium
  • 15Patrick T. Ellinor, Broad
  • 10Kyle Gaulton, UCSD
  • 2Bing Ren, UCSD
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 11inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

399 results

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Clear Filters
ChIP-seq
tissue
liver42
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
cell line
HepG29
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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