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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 504ChIP-seq
Assay category
  • 504DNA binding
Target of assay
  • 780histone modification
  • 779histone
  • 504transcription factor
  • 399narrow histone mark
  • 379broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 241November, 2017
  • 64November, 2018
  • 45August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2024
  • 4May, 2019
  • 1November, 2019
Available data
  • 486bigWig
  • 475bam
  • 459bed narrowPeak
  • 449fastq
  • 395bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 504Homo sapiens
Biosample type
  • 361cell line
  • 94tissue
  • 49in vitro differentiated cells
  • primary cell
Organ
  • 338liver
  • 51blood
  • 51bodily fluid
  • 39connective tissue
  • 19pancreas
  • 17adipose tissue
  • 16heart
  • 8kidney
  • 7blood vessel
  • 7vasculature
  • 6spleen
  • 5artery
  • 4epithelium
  • 3embryo
Project
  • 504AMP
Genome assembly (visualization)
  • 477hg19
  • 439GRCh38
Lab
  • 476AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

504 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
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