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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
10
ATAC-seq
9
total RNA-seq
4
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
61
DNA binding
10
DNA accessibility
9
Transcription
4
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
53
control
5
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
47
November, 2017
18
August, 2021
12
February, 2021
7
October, 2019
2
July, 2019
1
December, 2017
1
December, 2018
1
March, 2020
1
May, 2020
1
November, 2018
Available data
491
bam
bigWig
388
fastq
361
bed narrowPeak
330
bigBed narrowPeak
74
tsv
72
bed broadPeak
72
bigBed broadPeak
22
tagAlign
14
bed bed3+
4
tar
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
bed bed3
1
vcf
Organism
91
Homo sapiens
Biosample type
tissue
79
cell line
11
primary cell
1
in vitro differentiated cells
Organ
208
epithelium
191
pancreas
73
liver
47
connective tissue
18
vasculature
17
blood vessel
15
kidney
14
blood
14
bodily fluid
13
heart
10
artery
8
embryo
7
vein
3
musculature of body
2
eye
1
adipose tissue
1
bone element
1
bone marrow
1
brain
1
mammary gland
Project
91
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
74
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
biosample_type!
stem cell
tissue
files.file_type!
bigWig
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
52
1
9
2
2
2
1
smooth muscle cell of the coronary artery
2
8
primary cell
endothelial cell of umbilical vein
5
2
hepatocyte
1
1
Liver fetal (hepatocyte)
1
choroid plexus epithelial cell
1
in vitro differentiated cells
hepatocyte
1
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