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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
13
ChIP-seq
10
ATAC-seq
2
single cell RNA-seq
Assay category
58
Transcription
13
DNA binding
10
DNA accessibility
Target of assay
9
control
4
transcription factor
Date released
66
February, 2021
February, 2023
6
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
May, 2019
Available data
102
bam
85
bigWig
58
tsv
39
bed narrowPeak
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
81
Homo sapiens
Biosample type
66
cell line
13
tissue
2
primary cell
Organ
799
pancreas
637
connective tissue
480
adipose tissue
433
liver
396
epithelium
263
heart
250
kidney
158
brain
151
bone element
118
vasculature
116
blood vessel
81
artery
49
musculature of body
38
limb
37
embryo
24
eye
20
lung
17
nerve
15
blood
15
bodily fluid
12
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
81
AMP-T2D consortium
biosample_type!
stem cell
files.file_type!
bed bedgraph
bigBed narrowPeak
month_released!
February, 2023
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
1
5
1
coronary artery
1
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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