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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
189
total RNA-seq
22
ATAC-seq
4
Hi-C
4
WGBS
3
small RNA-seq
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
192
Transcription
23
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
49
November, 2018
40
May, 2022
35
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
680
bam
622
bigWig
465
fastq
440
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
722
Homo sapiens
Biosample type
356
tissue
340
cell line
15
in vitro differentiated cells
11
primary cell
Organ
887
pancreas
722
liver
464
epithelium
289
heart
264
kidney
237
brain
215
connective tissue
151
vasculature
150
blood vessel
100
adipose tissue
79
limb
71
artery
69
blood
69
bodily fluid
56
eye
46
musculature of body
41
nerve
37
embryo
22
spleen
20
lung
18
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
722
AMP
Genome assembly (visualization)
558
hg19
480
GRCh38
Lab
651
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
biosample_type!
stem cell
files.file_type!
bed broadPeak
bigBed bedMethyl
month_released!
February, 2021
BIOSAMPLE
ASSAY
722 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
tissue
liver
145
167
20
1
3
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
320
14
2
2
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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