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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
349
ChIP-seq
189
total RNA-seq
22
ATAC-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
349
DNA binding
193
Transcription
22
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
290
transcription factor
control
82
recombinant protein
56
histone
56
histone modification
54
RNA binding protein
41
narrow histone mark
19
chromatin remodeller
15
broad histone mark
1
other context
1
other post-translational modification
Date released
201
November, 2017
171
May, 2020
50
December, 2017
50
November, 2018
August, 2017
40
May, 2022
30
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
591
bigWig
562
bam
423
bed narrowPeak
368
fastq
352
bigBed narrowPeak
174
tsv
63
bed broadPeak
bigBed broadPeak
41
tagAlign
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
577
Homo sapiens
Biosample type
283
cell line
269
tissue
14
in vitro differentiated cells
11
primary cell
Organ
719
pancreas
577
liver
529
connective tissue
455
epithelium
414
adipose tissue
343
heart
264
kidney
217
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
34
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
577
AMP
Genome assembly (visualization)
529
hg19
463
GRCh38
Lab
510
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
biosample_type!
stem cell
files.file_type!
bigBed broadPeak
month_released!
August, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
WGBS
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
260
14
1
2
2
2
1
1
tissue
liver
65
167
20
1
1
1
1
right lobe of liver
7
3
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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