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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
212
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
28
control
Date released
86
October, 2019
85
November, 2017
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
bigBed broadPeak
32
bed bed3+
21
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
230
Homo sapiens
Biosample type
227
tissue
3
primary cell
Organ
933
pancreas
liver
656
connective tissue
489
epithelium
477
adipose tissue
338
heart
265
kidney
230
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
230
AMP
Genome assembly (visualization)
167
GRCh38
119
hg19
Lab
230
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
stem cell
files.file_type!
bigBed broadPeak
month_released!
July, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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