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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
18
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
18
DNA binding
9
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
18
control
Date released
35
February, 2023
11
May, 2019
10
February, 2021
6
August, 2021
5
October, 2019
3
February, 2020
2
July, 2019
2
March, 2020
Available data
165
bam
bigWig
120
bed narrowPeak
70
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bedpe bed3+
1
hic
Organism
74
Homo sapiens
Biosample type
63
tissue
10
cell line
1
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
113
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
43
GRCh38
10
hg19
Lab
74
AMP-T2D consortium
biosample_type!
stem cell
files.file_type!
bigWig
ibed
organ_slims!
vein
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
choroid plexus epithelial cell
1
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