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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
7
DNase-seq
1
ATAC-seq
1
Hi-C
Assay category
33
DNA binding
8
DNA accessibility
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
7
transcription factor
2
RNA binding protein
2
control
Date released
31
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
1
October, 2017
Available data
688
bam
623
bigWig
470
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
20
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
36
Homo sapiens
Biosample type
40
tissue
2
cell line
Organ
78
kidney
71
liver
50
brain
47
musculature of body
42
pancreas
36
limb
30
heart
29
connective tissue
27
epithelium
19
vasculature
18
ureter
15
blood vessel
7
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
42
AMP
Genome assembly (visualization)
40
hg19
36
GRCh38
Lab
41
AMP-T2D consortium
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
stem cell
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
27
1
pancreas
6
2
body of pancreas
4
cell line
Panc1
1
1
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