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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
7
DNase-seq
2
ATAC-seq
1
Hi-C
Assay category
9
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
24
histone
histone modification
14
broad histone mark
10
narrow histone mark
7
transcription factor
2
RNA binding protein
2
control
Date released
7
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
1
March, 2019
1
October, 2017
Available data
552
bam
481
bigWig
417
tsv
371
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
17
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
19
Homo sapiens
Biosample type
17
tissue
2
cell line
Organ
78
kidney
54
liver
38
brain
36
limb
34
musculature of body
30
heart
28
connective tissue
20
epithelium
19
pancreas
18
ureter
15
vasculature
12
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
embryo
1
spleen
Project
19
AMP
Genome assembly (visualization)
18
GRCh38
16
hg19
Lab
17
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
6
missing controlled_by
Audit category:
1
inconsistent assembly
biosample_type!
stem cell
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
19 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
9
2
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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