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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
DNase-seq
6
Hi-C
Assay category
86
DNA accessibility
6
3D chromatin structure
Date released
82
June, 2019
5
October, 2019
2
July, 2019
2
March, 2020
1
August, 2021
Available data
323
bam
311
bed narrowPeak
280
bigWig
182
bigBed narrowPeak
92
tsv
90
bed broadPeak
90
bigBed broadPeak
88
bed bed3+
64
xls
62
txt
6
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
csv
4
hic
3
fastq
2
bedpe bed3+
2
hdf5
1
tar
Organism
92
Homo sapiens
Biosample type
75
tissue
17
primary cell
Organ
79
kidney
36
limb
36
musculature of body
36
pancreas
35
brain
33
heart
27
connective tissue
27
epithelium
18
ureter
16
vasculature
15
liver
14
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
92
AMP
Genome assembly (visualization)
86
GRCh38
85
hg19
Lab
91
AMP-T2D consortium
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
stem cell
BIOSAMPLE
ASSAY
92 results
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DNase-seq
Hi-C
tissue
kidney
13
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
endothelial cell of hepatic sinusoid
1
+ See 6 more…
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