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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
75
single cell RNA-seq
51
ATAC-seq
41
ChIP-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
56
DNA accessibility
41
DNA binding
10
DNA methylation
Target of assay
100
histone
histone modification
52
broad histone mark
48
narrow histone mark
24
control
17
transcription factor
8
RNA binding protein
Date released
116
August, 2017
40
September, 2018
39
July, 2018
37
February, 2023
34
April, 2018
24
May, 2022
21
October, 2018
19
September, 2020
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
541
bam
476
bigWig
417
tsv
360
fastq
82
bed narrowPeak
80
zippedFastqFolder
37
bigBed narrowPeak
15
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
359
Homo sapiens
Biosample type
195
primary cell
165
tissue
Organ
420
liver
360
pancreas
201
epithelium
75
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
18
spleen
15
embryo
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
291
AMP
69
HPAP
Genome assembly (visualization)
256
hg19
250
GRCh38
Lab
265
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
6
missing controlled_by
biosample_type!
stem cell
month_released!
September, 2017
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
360 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
12
11
6
6
pancreatic beta cell
21
12
8
6
pancreatic acinar cell
4
9
4
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
+ See 4 more…
tissue
islet of Langerhans
97
6
20
8
1
1
body of pancreas
4
17
2
2
pancreas
4
2
1
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