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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
1
whole genome sequencing assay
Assay category
89
DNA binding
1
DNA sequencing
Target of assay
59
histone
59
histone modification
41
narrow histone mark
29
control
18
broad histone mark
1
transcription factor
Date released
50
May, 2020
20
August, 2017
12
November, 2017
5
August, 2021
3
May, 2021
Available data
972
bam
899
bigWig
707
fastq
573
bed narrowPeak
419
bigBed narrowPeak
325
tsv
89
tagAlign
84
bed broadPeak
84
bigBed broadPeak
80
zippedFastqFolder
29
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
7
bedpe bed3+
4
tar
3
cool
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
90
Homo sapiens
Biosample type
70
tissue
13
cell line
4
primary cell
3
in vitro differentiated cells
Organ
118
brain
87
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
1
pituitary gland
Project
90
AMP
Genome assembly (visualization)
44
hg19
33
GRCh38
Lab
89
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
11
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
whole genome sequencing assay
tissue
liver
70
cell line
HepG2
12
1
primary cell
hepatocyte
4
in vitro differentiated cells
pancreatic PP cell
3
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