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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 247ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 247DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 94histone
  • 94histone modification
  • 53control
  • 48broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 70August, 2017
  • 24December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 262fastq
  • 256bam
  • 214bigWig
  • 199bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 35bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 255Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • stem cell
Organ
  • 122liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 262AMP
Genome assembly (visualization)
  • 224hg19
  • 188GRCh38
Lab
  • 262AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • stem cell
BIOSAMPLE
ASSAY

262 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
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