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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 126ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5total RNA-seq
  • 4GRO-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 126DNA binding
  • 66DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 75transcription factor
  • 38control
  • 13histone
  • 13histone modification
  • 12recombinant protein
  • 11broad histone mark
  • 3chromatin remodeller
  • 2narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 46December, 2017
  • 39May, 2022
  • 21August, 2017
  • 16February, 2021
  • 10January, 2019
  • 5November, 2018
  • 5September, 2017
  • 4January, 2018
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 163fastq
  • 142bam
  • 107bigWig
  • 90bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 9bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 203Homo sapiens
Biosample type
  • 64cell line
  • 64primary cell
  • 57tissue
  • 18in vitro differentiated cells
  • stem cell
Organ
  • 105liver
  • 55pancreas
  • 48epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 2adipose tissue
  • 1brain
Project
  • 147AMP
  • 56HPAP
Genome assembly (visualization)
  • 102hg19
  • 97GRCh38
  • 4hg18
Lab
  • 146AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 17inconsistent control read length
biosample_type!
  • stem cell
BIOSAMPLE
ASSAY

203 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
GRO-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
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