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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
total RNA-seq
69
ATAC-seq
41
WGBS
18
ChIP-seq
6
MeRIP-seq
4
Hi-C
2
STARR-seq
1
whole genome sequencing assay
Assay category
82
Transcription
69
DNA accessibility
41
DNA methylation
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
7
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
120
May, 2022
37
February, 2023
31
August, 2021
19
September, 2020
7
August, 2020
February, 2021
6
November, 2020
3
October, 2022
Available data
80
zippedFastqFolder
63
fastq
44
bigWig
34
bed narrowPeak
9
tsv
4
bedpe bed3+
4
hic
3
cool
1
vcf
Organism
223
Homo sapiens
Biosample type
146
primary cell
40
tissue
37
cell line
Organ
215
pancreas
191
kidney
152
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
146
HPAP
77
AMP
Genome assembly (visualization)
38
hg19
10
GRCh38
Lab
AMP-T2D consortium
146
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
3
audit script error
biosample_type!
stem cell
lab.title!
AMP-T2D consortium
month_released!
February, 2021
BIOSAMPLE
ASSAY
223 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
MeRIP-seq
Hi-C
STARR-seq
whole genome sequencing assay
primary cell
pancreatic alpha cell
42
29
25
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
tissue
liver
20
20
cell line
HepG2
9
18
1
2
1
EndoC_BH1
6
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